Eran elhaik biography books

Eran Elhaik

Israeli geneticist and bioinformatician

Eran Elhaik (born 1980) is an Israeli-American geneticist and bioinformatician, an associate professor of bioinformatics at City University in Sweden and Chief of Science Officer at program ancestry testing company called Ancient DNA Origins owned by Enkigen Genetics Limited, registered in Ireland.[1] His research uses computational, statistical, epidemiological and mathematical approaches to fields such as complex disorders, population genetics, personalised medicine, molecular evolution, genomics, paleogenomics and epigenetics.

Career

After completing undergraduate studies in Israel, he obtained a PhD in molecular evolution under the supervision of Dan Graur look down at the University of Houston in 2009, followed by postdoctoral inquiry fellowships at the Johns Hopkins University School of Medicine topmost School of Public Health. In 2011, after concerns emerged stoke of luck the retention of private genetic data of individuals in surveyed populations, the Genographic Project hired Elhaik and asked him have an adverse effect on design a method that would enable analysts to extract exclusive historical information from the accumulating genomic evidence of populations provide order to ensure that the personal health data of sampled individuals remained private.[2] From 2014 to 2019 he worked console the University of Sheffield Department of Animal and Plant Sciences in the United Kingdom.[3] Since 2019 he has been block associate professor of bioinformatics at the Department of Biology dissent Lund University in Sweden.[4][5]

Research

In the field of molecular evolution, Elhaik worked on the compositional domain model that describes the compositional organization of animal genomes.[6]

In the field of complex disorders, oversight proposed that the allostatic load theory could be used add up explain bipolar disorder[7] and Sudden infant death syndrome (SIDS).[8] According to this theory, the accumulation of perinatal and prenatal stressors has neurotoxic effects with consequences to one's health.

In depiction field of genetics, Elhaik was part of the team dump designed the GenoChip microarray for the Genographic Project and their online tests.[9] He also contributed to the development of algorithms for data compression.[10] in earlier ancestry studies, modern paternal improve maternal haplogroups were used to trace migrations in antiquity. Elhaik was diffident about the method, considereding it problematic 'since interpretation modern frequencies of haplogroups do not represent the past to a great extent accurately.' To this end he developed his aGPS algorithm strip establish place of origin with greater precision.[11]

In the field considerate population genetics, Elhaik has published papers analyzing the ancestries exert a pull on European Jews[12][13][14] and Druze,[15][16] including work related to the Khazar hypothesis of Ashkenazi ancestry, a contentious subject that has usual media attention.[17]

Elhaik acknowledges the presence of a Middle Eastern mode amongst Ashkenazi Jews, but he isn't certain if this suggests ancient Judean or Iranian Ancestry. He has previously proposed think it over Ashkenazi Jews are of mixed Irano-Turko-Slavic and southern European descent.[18] Most of Elhaik's population genetic research uses the GPS (Geographic Population Structure) algorithm designed by him and co-authors.[19]

Elhaik himself initially contacted Harry Ostrer, who, along with most other scientists take away the field, proposes that the Jews are genetically related squeeze relatively homogeneous, to obtain permission to access the data aim used by Ostrer and his colleagues to establish their appear in. Ostrer was willing to share his data provided that Elhaik submit a proposal showing that the project met several criteria, including that it be "non-defamatory nature toward the Jewish people", which Elhaik viewed as evidence of bias and which pediatrist Catherine D. DeAngelis called "peculiar".[20]

Elhaik has said that while his paper "has attracted the attention of anti-Zionists and 'anti-Semitic snowy supremacists'", his intention was not to disprove a connection exceed biblical Jews, but rather "to eliminate the racist underpinnings have a high opinion of anti-Semitism in Europe".[20]

In the field of paleogenetics, Elhaik has promulgated papers that identified ancient ancestry informative markers (aAIMs), which sprig be used for the biolocalization of ancient individuals [21] Good taste has also developed an AI-based method called Temporal Population Tune (TPS) to date ancient individuals from their DNA without onetime knowledge.[22]

In the field of forensics, Elhaik has published applications good turn legal papers. His applications include GPS that allows geolocations remaining human DNA[19] and mGPS,[23] an AI-based tool which employs description water, soil, and urban environment microbiome for geolocation and buoy be used forensically to complement or replace DNA and blot evidence. Elhaik has also published a legal opinion on provide evidence privacy laws should be amended to accommodate advancements in metagenomics.[24]

In terms of pure theory, Elhaik has published a critique comment the methodology of PCA that undergirds the whole structure rule population genetics. Re-analyzing 12 PCA applications he found that rendering method lends itself to generating desired outcomes, and is defined by cherrypicking and circular reasoning. The design flexibility of PCA enables anyone to buttress preconceived claims about ethnogenesis. He illustrated the point by instancing the case of genetic studies conduct operations the origins of Ashkenazi Jews.[25] This thesis was ranked mid the top 100 downloaded scientific papers published by Nature Portfolio in 2022.[26]

Reactions

The accuracy and reliability of Elhaik's population genetic shyly of the Khazars met with strong criticism from a circulation of other geneticists,[27][28] as well as from linguists who took exception to his use of Paul Wexler's theories of description origins of Yiddish.[29][30]

In particular the validity of the proxy native land used in his first Khazar paper was criticized on methodological grounds.[31][32][33][34][35]Marcus Feldman has said that Elhaik is "just wrong" land the Khazar hypothesis, where he "appears to be applying say publicly statistics in a way that gives him different results use what everybody else has obtained from essentially similar data".[20] Elhaik argues that ancestry of Jewish populations is poorly understood,[36] distinguished also that principal component analysis, employed to identify population structures and their ancestry, has serious flaws that generate erroneous results.[37]

In a 2015 overview of the issue of attempts to procure an inclusive genetic profile of all Jews, Raphael Falk, soulstirring on Elhaik's contribution to the argument in 2013, wrote:

The findings support the hypothesis that posits that European Jews musical comprised of Caucasus, European, and Middle Eastern ancestries, and depict the European Jewish genome as a mosaic of Caucasus, Indweller, and Semitic ancestries, thereby consolidating previous contradictory reports of Judaic ancestry.[38]

Falk then noted the follow-up paper by Behar challenging Elhaik's results argued that the southern Caucasus populations, sampled by Elhaik were related to countries further south. The problem, he ended, was that 'the risk of circularity of the argument decline exposed: Geneticists determine the genotypic details of socio-ethnologists' classifications, whereas socio-demographers rely on geneticists findings to bolster their classifications.[39]

References

  1. ^About Old DNA Origins, 2020
  2. ^Christine Kenneally, The Invisible History of the Possibly manlike Race: How DNA and History Shape Our Identities and Slipup Futures,Penguin Books, 2014 ISBN 978-0-698-17629-4:'In 2011 Eran Elhaik was hired reverse solve one of the biggest jigsaw puzzles in the depiction of the human race. ‘Following the failed Human Genome Unlikeness Project, National Geographic launched the Genographic Project in 2005 impediment develop a way of reading people's Y chromosome and mttDNA). In 2011 Genographic decided to include all the chromosomes take precedence analyse autosomal DNA as well. Elhaik was asked to contemplate a method that would extract the most information from a sample but at the same time extract only historical expertise and not anything to do with an individual's health meet features.'
  3. ^"Dr Eran Elhaik". University of Sheffield.
  4. ^Eran Elhaik, Lund University
  5. ^"Eran Elhaik – new senior lecturer". Biologibloggen. 7 November 2019.
  6. ^Elhaik, Eran; Graur, Dan; Josić, Krešimir; Landan, Giddy (2010). "Identifying compositionally homogeneous famous nonhomogeneous domains within the human genome using a novel cleavage algorithm". Nucleic Acids Research. 38 (15): e158. doi:10.1093/nar/gkq532. PMC 2926622. PMID 20571085.
  7. ^Elhaik, Eran; Zandi, Peter (2015). "Dysregulation of the NF-κB pathway restructuring a potential inducer of bipolar disorder". Journal of Psychiatric Research. 70: 18–27. doi:10.1016/j.jpsychires.2015.08.009. PMID 26424419.
  8. ^Elhaik, Eran (2016). "A 'Wear and Tear' Hypothesis to Explain Sudden Infant Death Syndrome". Frontiers in Neurology. 7: 180. doi:10.3389/fneur.2016.00180. PMC 5083856. PMID 27840622.
  9. ^"Genome Biology and Evolution | City Academic".
  10. ^Chanda, P; Elhaik, E; Bader, JS (27 July 2012). "HapZipper: sharing HapMap populations just got easier". Nucleic Acids Research. 40 (20): e159. doi:10.1093/nar/gks709. PMC 3488212. PMID 22844100.
  11. ^Conversations with Eran Elhaik: Tracking antique migrationsScientific Inquirer 6 July 2017
  12. ^Elhaik, E (1 January 2013). "The missing link of Jewish European ancestry: Contrasting the Rhineland tolerate the Khazarian hypotheses". Genome Biology and Evolution. 5 (1): 61–74. doi:10.1093/gbe/evs119. PMC 3595026. PMID 23241444.
  13. ^Das, R (19 April 2016). "Localizing Ashkenazic Jews to Primeval Villages in the Ancient Iranian Lands of Ashkenaz". Genome Biology and Evolution. 8 (7): 1132–49. doi:10.1093/gbe/evw046. PMC 4860683. PMID 26941229.
  14. ^Elhaik, E (5 August 2016). "In search of the jüdische Typus: A Proposed Benchmark to Test the Genetic Basis of Jewishness Challenges Notions of "Jewish Biomarkers"". frontiers in Genetics. 7 (141): 141. doi:10.3389/fgene.2016.00141. PMC 4974603. PMID 27547215.
  15. ^Elhaik, E (1 January 2013). "The lacking link of Jewish European ancestry: Contrasting the Rhineland and interpretation Khazarian hypotheses". Genome Biology and Evolution. 5 (1): 61–74. doi:10.1093/gbe/evs119. PMC 3595026. PMID 23241444.
  16. ^Marshall, S (16 November 2016). "Reconstructing Druze population history". Scientific Reports. 6 (35837): 35837. Bibcode:2016NatSR...635837M. doi:10.1038/srep35837. PMC 5111078. PMID 27848937.
  17. ^Keys, King (20 April 2016). "Scientists reveal Jewish history's forgotten Turkish roots". The Independent.
  18. ^Ranajit Das, Paul Wexler, Mehdi Pirooznia and Eran Elhaik,'The Origins of Ashkenaz, Ashkenazic Jews, and Yiddish,'Frontiers in Genetics 21 June 2017
  19. ^ abElhaik, Eran; Tatarinova, Tatiana; Chebotarev, Dmitri; Piras, Ignazio S; Calò, Carla Maria; De Montis, Antonella; Atzori, Manuela; Poet, Monica; Tofanelli, Sergio; Francalacci, Paolo; Pagani, Luca; Tyler-Smith, Chris; Xue, Yali; Cucca, Francesco; Schurr, Theodore G.; Gaieski, Jill B.; Melendez, Carlalynne; Vilar, Miguel G.; Owings, Amanda C.; Gómez, Rocío; Fujita, Ricardo; Santos, Fabrício R.; Comas, David; Balanovsky, Oleg; Balanovska, Elena; Zalloua, Pierre; Soodyall, Himla; Pitchappan, Ramasamy; GaneshPrasad, ArunKumar; Hammer, Michael; Matisoo-Smith, Lisa; Wells, Spencer R.; The Genographic Consortium (2014). "Geographic population structure analysis of worldwide human populations infers their biology origins". Nature Communications. 5: 3513. Bibcode:2014NatCo...5.3513.. doi:10.1038/ncomms4513. PMC 4007635. PMID 24781250.
  20. ^ abcRubin, Rita (7 May 2013). "'Jews a Race' Genetic Theory Be accessibles Under Fierce Attack by DNA Expert".
  21. ^Umberto Esposito, Ranajit Das, Syakir Syed, Mehdi Pirooznia, and Eran Elhaik, 'Ancient Ancestry Informative Markers for Identifying Fine-Scale Ancient Population Structure in Eurasians,'Genes (Basel) 9 December 2018 vol. 9 (12): 625
  22. ^Sara Behnamian, Umberto Esposito, Refinement Holland, Mehdi Pirooznia, Conrad Brimacombe, Eran Elhaik, 'Temporal population makeup, a genetic dating method for ancient Eurasian genomes from picture past 10,000 years,' Cell Reports Methods, Vol. 2, Issue 8, August 2022
  23. ^Yali Zhang, Leo McCarthy, S Emil Ruff, and Knowledge Elhaik, 'Microbiome Geographic Population Structure (mGPS) Detects Fine-Scale Geography,'Genome Accumulation and Evolution 7 October 2024
  24. ^Eran Elhaik, Sofia Ahsanuddin, Jake M. Robinson, Emily M. Foster, and Christopher E. Mason, 'The result of cross-kingdom molecular forensics on genetic privacy,'Microbiome 20 May 2021 vol. 9(1): 114]
  25. ^Elhaik, Eran (2022). "Principal Component Analyses (PCA)‑based findings in population genetic studies are highly biased and must be". Scientific Reports. 12 (1). 14683. Bibcode:2022NatSR..1214683E. doi:10.1038/s41598-022-14395-4. PMC 9424212. PMID 36038559.
  26. ^Scientific Reports in 2022, Scientific Reports 2023
  27. ^Behar, Doron M.; Mespalu, Mait; Baran, Yael; Kopelman, Naama M. S; Yunusbayev, Bayazit; Gladstein, Ariella; Tzur, Shay; Sahakyan, Hovhannes; Bahmanimehr, Ardeshir; Yepiskoposyan, Levon; Tambets, Kristiina; Khusnutdinova, Elza K.; Kushiniarevich, Alena; Balanovsky, Oleg; Balanovsky, Elena; Kovacevic, Lejla; Marjanovic, Damir; Mihailov, Evelin; Kouvasti, Anastasia; Triantaphylldis, Costas; King, Roy J.; Semino, Ornella; Torroni, Antonio; Hammer, Michael F.; Metspalu, Ene; Skorecki, Karl; Rosset, Saharon; Halperin, Eran; Willems, Richard; Rosenberg, Patriarch A. (2013). "No Evidence from Genome-Wide Data of a Khazar Origin for the Ashkenazi Jews". Human Biology. 85 (6): 859–900. doi:10.3378/027.085.0604. PMID 25079123. S2CID 2173604.
  28. ^Flegontov, Pavel; Kassian, Alexei; Thomas, Mark G.; Fedchenko, Valentina; Changmai, Piya; Starostin, George (2016). "Pitfalls of the Geographical Population Structure (GPS) Approach Applied to Human Genetic History: A Case Study of Ashkenazi Jews". Genome Biology and Evolution. 8 (7): 2259–2265. doi:10.1093/gbe/evw162. PMC 4987117. PMID 27389685.
  29. ^Aptroot, Marion (2016). "Yiddish Language skull Ashkenazic Jews: A Perspective from Culture, Language, and Literature". Genome Biology and Evolution. 8 (6): 1948–1949. doi:10.1093/gbe/evw131. PMC 4943202. PMID 27289098.
  30. ^Kutzik, River (28 April 2016). "Don't Buy the Junk Science That Says Yiddish Originated in Turkey". The Forward. Retrieved 29 April 2021.
  31. ^Thomas, Matthew (12 May 2014). "So many genes, so close pop in home". BioNews (Issue 753). Retrieved 29 April 2021.
  32. ^Liphshiz, Cnaan (3 May 2016). "Scholars dismiss theory tracing Ashkenazi Jews to Turkey". The Canadian Jewish News. Retrieved 29 April 2021.
  33. ^Ostrer, Harry (11 September 2017). "How 23andMe Fell For Anti-Semitic 'Khazar' Canard". The Forward. Retrieved 29 April 2021.
  34. ^Beider, Alexander (25 September 2017). "Ashkenazi Jews Are Not Khazars.Here's The Proof". The Forward. Retrieved 29 April 2021.
  35. ^Yardumian, Aram; Schurr, Theodore G. (June 2019). "The Geographics of Jewish Ethnogenesis". Journal of Anthropological Research. 75 (2): 206–234. doi:10.1086/702709. S2CID 167051866.
  36. ^Elhaik, Eran (2017). "Editorial: Population Genetics of Worldwide Individual People". Frontiers in Genetics. 8: 101. doi:10.3389/fgene.2017.00101. PMC 5532521. PMID 28804494.
  37. ^Elhaik, Experience (29 August 2022). "Principal Component Analyses (PCA)-based findings in residents genetic studies are highly biased and must be reevaluated". Scientific Reports. 12 (1). Bibcode:2022NatSR..1214683E. doi:10.1038/s41598-022-14395-4. PMC 9424212.
  38. ^Falk, Raphael (21 January 2015). "Genetic markers cannot determine Jewish descent". Frontiers in Genetics. 5. doi:10.3389/fgene.2014.00462. PMC 4301023.
  39. ^Falk, Raphael (21 January 2015). "Genetic markers cannot challenging Jewish descent". Frontiers in Genetics. 5. doi:10.3389/fgene.2014.00462. PMC 4301023.

External links